PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0408s0190.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 240aa    MW: 27584.1 Da    PI: 4.9678
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0408s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox171.1e-05561751
                            --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHH CS
                Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNr 51
                            ft  +  e+e+lF++  +  +  +  e+LA++            +t rqV+ WFq r
  SapurV1A.0408s0190.1.p  5 FTLFEMLEMENLFKEsrEEALAPQFCEKLASSFsyapsragkeAITPRQVQSWFQDR 61
                            66677889******766889***********************************88 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.07168IPR001356Homeobox domain
PfamPF167198.7E-40107234IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006306Biological ProcessDNA methylation
GO:0006346Biological Processmethylation-dependent chromatin silencing
GO:0031047Biological Processgene silencing by RNA
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDFEFTLFEM LEMENLFKES REEALAPQFC EKLASSFSYA PSRAGKEAIT PRQVQSWFQD  60
RLKKSQPQVA SSNMALKLLT NLSDASTSFG ATESSQKLKG NASDLSELIF EALSSKDNAW  120
YDIASFLNYR VLCSGELEVR VRFAGFRNTD DEWVNVRRAV RERSIPLEPS ECQRVKVGDL  180
VLCFQEREER AVYCDAHVLE INRQLHDINS CRCTFVVRYD HDDIEEKVQL DRLCRRPTP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuv_A1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_A1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A1e-601062372133SHH1 SAWADEE
4iur_B1e-601062372133SHH1 SAWADEE
4iuq_A1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B1e-601062372133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2314782e-31CU231478.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299736.11e-158hypothetical protein POPTR_0001s19000g
SwissprotQ9XI472e-90SHH1_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 1
TrEMBLB9GGM11e-158B9GGM1_POPTR; Uncharacterized protein
STRINGPOPTR_0001s19000.11e-158(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27041415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.12e-55sequence-specific DNA binding transcription factors;sequence-specific DNA binding